Contact Information:
Kathleen Pryer
Department of Biology
Duke University
Durham, NC 27707-0338
Telephone: 919-660-7380

    • fay-wei with Gaga

Fay-Wei Li 李飛葦, Postdoctoral Researcher


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Please visit my website to read about my latest research at Boyce Thompson Institute.



Ph.D. Department of Biology, Duke University (2010-2015)

B.S. Department of Life Science, National Taiwan University (2005-2009)


Hsu, P.Y., L. Calviello, H.-.Y. L. Wu*, F.-W. Li*, C.J. Rothfels, U. Ohler, P.N. Benfey. 2016. Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis. Proceedings of the National Academy of Sciences USA (in press) doi: 10.1073/pnas.1614788113. *Equally contributed 

Jia, Q., G. Li, T.G. Köllner, J. Fu, X. Chen, W. Xiong, B.J. Crandall-Stotler, J.L. Bowman, D.J. Weston, Y. Zhang, L. Chen, Y. Xie, F.-W. Li, C.J. Rothfels, A. Larsson, S.W. Graham, D.W. Stevenson, G.K.-S. Wong, J. Gershenzon, F. Chen. (2016). Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants. Proceedings of the National Academy of Sciences USA

Li, F.-W., C.A. Rushworth, J.B. Beck, M.D. Windham. Boechera (Brassicaceae) Microsatellite Database: an online portal for species identification and hybrid relationship resolution. Database (in revision). 


Li, F.-W., L.-Y. Kuo, K.M. Pryer, C.J. Rothfels. Genes translocated into the plastid inverted repeat show decelerated substitution rates and elevated GC content. Genome Biology and Evolution (in press).

Rothfels, C.J., K.M. Pryer, F.-W. Li, Next-generation polyploid phylogenetics: Rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing. New Phytologist (in press).

     Source code

Stevenson, S.R., Y. Kamisugi, J. Schmutz, J.W. Jenkins, J. Grimwood, W. Muchero, G.A. Tuskan, S.A. Rensing, D. Lang, R. Reski, C. Trinh, M. Melkonian, C.J. Rothfels, F.-W. Li, A. Larsson, G.K.S. Wong, T. Edwards, A.C. Cuming. 2016. Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE (ANR): a regulator of ABA responses unique to basal land plants, required for desiccation tolerance. Plant Cell 28 1310–1327.

Li, F.-W., S. Mathews. 2016. Evolutionary aspects of plant photoreceptors [invited review]. Journal of Plant Research 129: 115-122. Reprint PDF.

Li, F.-W., L.Y. Kuo, Y.H. Chang, T.C. Hsu, H.C. Hung, W.L. Chiou, C.J. Rothfels, Y.M. Huang. 2016. Asplenium pifongiae (Aspleniaceae: Polypodiales), a new species from Taiwan. Systematic Botany 41: 24-31. Reprint PDF

Pryer, K.M., L. Huiet, F.-W. Li, C.J. Rothfels, E. Schuettpelz. 2016. Maidenhair ferns––Adiantum––are indeed monophyletic, and sister to to the shoestring ferns––vittaroids (Pteridaceae). Systematic Botany 41: 14-23 Reprint PDF

Li, F.-W., M. Melkonian, C.J. Rothfels, J.C. Villareal, D. Stevenson, S.W. Graham, G.K.-S. Wong, K.M. Pryer, S. Mathews. 2015. Phytochrome diversity in green plants and the origin of canonical plant phytochromes. Nature Communications 6: 7852. Reprint PDF

    Featured in: DukeTodayScience, Faculty of 1000, NSF Science360 News

Li, F.-W., C.J. Rothfels, M. Melkonian, J.C. Villarreal, D.W. Stevenson, S.W. Graham, G.K.-S. Wong, S. Mathews, and K.M. Pryer. 2015. The origin and evolution of phototropins in plants. Frontiers in Plant Science: 6: 637. Reprint PDF

Windham, M.D., J.B. Beck, F.-W. Li, A. Allphin, J.G. Carman, C.A. Rushworth, E.M. Sigel, P.J. Alexander, C.D. Bailey, I.A. Al-Shehbaz. 2015. Searching for diamonds in the apomictic rough: A case study involving Boechera lignifera (Brassicaceae). Systematic Botany 40:1031-1044. Reprint PDF

Wolf, P.G., E.B. Sessa, D.B. Marchant, F.-W. Li, C.J. Rothfels, E.M. Sigel, M.A. Gitzendanner, C.J. Visger, J.A. Banks, D.E. Soltis, P.S. Soltis, K.M. Pryer, and J.P. Der. 2015. An exploration into fern genome space. Genome Biology and Evolution 7: 2533-2544. Reprint PDF

Rothfels C.J., F.-W. Li, E.M Sigel., L. Huiet, A. Larsson, D.O. Burge, M. Ruhsam, M. Deyholos, D. Soltis, N. Stewart, S. Shaw, L.M. Pokorny, T. Chen, C. dePamphilis, L. DeGironimo, D.W. Stevenson, S.W. Graham, G.K.-S. Wong, and K.M. Pryer. 2015. The evolutionary history of ferns inferred from 25 single-copy nuclear genes. American Journal of Botany 102: 1089-1107. Reprint PDF

Li, F.-W., K.M. Pryer. 2014. Crowdfunding the Azolla fern genome project: a grassroots approach. GigaScience, 3: 16. Reprint PDF

     Featured inGigaScience Editor's pick

Li, F.-W., J.C. Villarreal, S. Kelly, C.J. Rothfels, M. Melkonian, E. Frangedakis, M. Ruhsam, E. M. Sigel, J.P. Der, J. Pittermann, D.O. Burge, L. Pokorny, A. Larsson, T. Chen, S. Weststrand, P. Thomas, E. Carpenter, Y. Zhang, Z. Tian, L. Chen, Z. Yan, Y. Zhu, X. Sun, J. Wang, D.W. Stevenson, B.J. Crandall-Stotler, A.J. Shaw, M.K. Deyholos, D.E. Soltis, S.W. Graham, M.D. Windham, J.A. Langdale, G.K.S. Wong, S. Mathews & K.M. Pryer. 2014. Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proceedings of the National Academy of Sciences USA, 111: 6672-6677. Reprint PDF

     Featured in: New York TimesThe EconomistNational GeographicScientific AmericanFaculty of 1000Current BiologyNature Reviews Genetics

Sessa, E.B., J.A. Banks, M.S. Barker, J.P. Der, A.M. Duffy, S.W. Graham, M. Hasebe, J. Langdale, F.-W. Li, D.B. Marchant, K.M. Pryer, C.J. Rothfels, S.J. Roux, M.L. Salmi, E.M. Sigel, D.E. Soltis, P.S. Soltis, D.W. Stevenson, P.G. Wolf. 2014. Between two fern genomes. GigaScience, 3:15. Reprint PDF

Zhang, W.Y., L.Y. Kuo, F.-W. Li, C.N. Wang, W.L. Chiou. 2014. The hybrid origin of Adiantum meishanianum (Pteridaceae): a rare and endemic species in Taiwan. Systematic Botany, 39: 1034-1041. Reprint PDF

Rothfels, C.J., A. Larsson, F.-W. Li, E.M. Sigel, L. Huiet, D.O. Burge, M. Ruhsam, S. Graham, D. Stevenson, G.K.S. Wong, P. Korall, K.M. Pryer. 2013. Transcriptome-mining for Fern Single-copy Nuclear Regions. PLoS One 8: e76957. Reprint PDF

Li, F.-W., Pryer, K.M., Windham, M.D. 2012. Gaga, a new genus segregated from Cheilanthes (Pteridaceae). Systematic Botany 37: 845-860. Reprint PDF

     Featured in: Rolling StoneWiredHuffington PostNational GeographicGuardianNew York Times

Li, F.-W., Kuo, L.Y., Rothfels, C.J., Ebihara, A., Chiou, W.L., Windham, M.D., Pryer, K.M. 2011. rbcL and matK earn two thumbs up as the core DNA barcode for ferns. PLoS One 6: e26597. Reprint PDF

Li, F.-W. 2011. Book review: Knapp, Ralf. 2011. Ferns and Fern Allies of Taiwan. Taxon 60: 1233-1234. Reprint PDF

Kuo*, L.Y., Li*, F.W., Chiou, W.L., Wang, C.N. 2011. The first insight into fern matK phylogeny. Molecular Phylogenetics and Evolution 59: 556-566. *Equally contributed Reprint PDF

Li*, F.-W., Kuo*, L.Y., Huang, Y.M., Chiou, W.L., Wang, C.N. 2010. Tissue-Direct PCR, a rapid and extraction-free method for barcoding of ferns. Molecular Ecology Resources 10: 92-95. *Equally contributed Reprint PDF

Li, F.-W., Tan, B.C., Buchbender, V., Moran, R.C., Rouhan, G., Wang, C.N., Quandt, D. 2009. Identifying a mysterious aquatic fern gametophyte. Plant Systematics and Evolution 281: 77-86. Reprint PDF

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